![]() The "public user-repository" is also the location where the prefetch-tool puts downloads, if not choosen otherwise. Please note that an empty directory can only be choosen as the location of the "public user-repository." Remote locations such as AWS and GCP operate much faster if larger chunks are requested. This will also improve speed because large chunks are requested from the remote location. ![]() The "process-local" cache is automatically removed the moment the tool has finished it's job. There is a special tool "cache-mgr" to remove cache-files if no longer needed or you are running out of space. If the same or another tool uses this accession again, there is no need to access the remote location, which improves the speed. This means that if a tool has usedĪ particular accession, the cache-file remains at this location. The difference is that "public user-repository" is persistent. If both are configured, "process-local" is ignored. There are 2 different locations you can set: "public user-repository" and "process-local." compute-clusters ) if a common location cannot be configured. The checkbox "enable local file-caching" enables caching into files. This page controlls the caching behavior. SRA Lite format is smaller and contains simplified quality scores. if enabled, instructs sra-tools to fetch the SRA Lite version of data when available. this setting is only visible if your admin has configured a local site-repository. If you turn this checkbox off and you have no local data available ( via download ), the SRA Toolkit cannot find any data. Remote locations are either servers at NCBI, AWS, or GCP. if enabled, instructs the sra-tools to fetch data from remote locations via https. The first page: MAIN, contains just these 3 settings: discard all changes made ( since start or last save ) exit the tool, asking to save if settings have been changed save the current settings, but do not exit You operate the buttons by pressing the letter highlighted in red, or by pressing the tab-key until the wanted button is reached and then pressing the space- or the enter-key. The top line of buttons is visible on all 6 pages. ![]() The tool has 6 pages for different aspects of settings. Go to the "bin" subdirectory for the Toolkit and run the following command line:Ī window will open and present the screen below. If you are currently working with dbGaP-data, please update to the latest version if you wish to download data into AWS or GCP buckets. This page describes how to use version 2.11.2 of vdb-config. If you are using SRA Toolkit version 2.4 or higher, you should run the configuration tool located within the bin subdirectory of the Toolkit package. ![]()
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